Skip to contents

Generate differential expression analysis reports

Source: R/make_DEA_report2.R
write_DEA_all.Rd

Writes results of DEA see generate_DEA_reports

Usage

write_DEA_all(
  grp2,
  name = "",
  boxplot = TRUE,
  render = TRUE,
  ORA = TRUE,
  GSEA = TRUE,
  markdown = "_Grp2Analysis.Rmd",
  toc = TRUE
)

Arguments

grp2

ProlfquAppConfig configuration with results

name

optional name prefix for output files

boxplot

if TRUE generate boxplots

render

if TRUE render HTML reports

ORA

if TRUE write ORA gene lists

GSEA

if TRUE write GSEA rank files

markdown

Rmd template to render

toc

if TRUE include table of contents