Plot PTM occupation, use after adjusting for total proteome
Usage
n_to_c_usage(
data_combined_diff,
contrast_name,
FDR_threshold = 0.05,
fc_threshold = 0,
impute_flag = "Imputed_Mean_moderated",
protein_Id = "protein_Id"
)Arguments
- data_combined_diff
data frame with combined differential analysis results
- contrast_name
name of the contrast to plot
- FDR_threshold
FDR threshold for filtering significant sites (default 0.05)
- fc_threshold
Fold change threshold for filtering (default 0)
- impute_flag
Flag for imputed values (default "Imputed_Mean_moderated")
- protein_Id
Column name for protein identifier (default "protein_Id")