Convert PTMsigDB pathways to TERM2GENE format — ptmsigdb_to_term2gene • prophosqua

Converts pathway list from fgsea::gmtPathways() to data.frame format required by clusterProfiler::enricher.

Usage

ptmsigdb_to_term2gene(pathways)

Arguments

pathways: Named list of pathways (from fgsea::gmtPathways)

Value

data.frame with columns: term, gene