Convert prolfqua differential expression analysis results to SummarizedExperiment

Convert prolfqua differential expression analysis results to SummarizedExperiment

Usage

make_SummarizedExperiment(
  GRP2,
  colname = NULL,
  rowname = NULL,
  strip = "~lfq~light",
  .url_builder = bfabric_url_builder
)

Arguments

GRP2

list with DEA results (RES, project_spec fields)

colname

column name for sample identifier

rowname

column name for row identifier

strip

regex pattern to strip from rownames

.url_builder

function to build bfabric URLs

Value

SummarizedExperiment