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Convert prolfqua differential expression analysis results to SummarizedExperiment

Source: R/make_DEA_report2.R
make_SummarizedExperiment.Rd

Convert prolfqua differential expression analysis results to SummarizedExperiment

Usage

make_SummarizedExperiment(
  GRP2,
  colname = NULL,
  rowname = NULL,
  strip = "~lfq~light",
  .url_builder = bfabric_url_builder
)

Arguments

GRP2

return value of make_DEA_report

colname

column name for sample identifier

rowname

column name for row identifier

strip

regex pattern to strip from rownames

.url_builder

function to build bfabric URLs

Value

SummarizedExperiment

See also

Other workflow: make_DEA_report(), write_DEA()