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DIANN helper functions

Source: R/read_DIANN_output.R
read_DIANN_output.Rd

DIANN helper functions

Usage

read_DIANN_output(
  diann.path,
  fasta.file,
  nrPeptides = 2,
  q_value = 0.01,
  isUniprot = TRUE,
  rev = "REV_"
)

Arguments

diann.path

path to diann-output.tsv

fasta.file

path to fasta file

nrPeptides

peptide threshold

q_value

q value threshold

isUniprot

logical, is the fasta file from UniProt

rev

prefix for reversed/decoy entries

Value

This function now errors and points users to prolfquapp.

Examples

try(read_DIANN_output("report.tsv", "database.fasta"), silent = TRUE)