Package index
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ContrastsSAINTFacade - SAINTexpress contrast analysis facade
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ContrastsSAINTexpress - Wrapper to results produced by SAINTexpress
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apparams_Bfabric() - get apparams from bfabric executable
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copy_SAINT_express() - copy Markdown and runscript for DIANN diann-output.tsv
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dataset_set_factors_deprecated() - set factors and sample names columns
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get_files_DIANN() - find DIANN files
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get_params_Bfabric() - get params from bfabric executable
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normalize_exp() - normalize and then exponentiate data.
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read_DIANN_output() - DIANN helper functions
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add_protein_lengths()protein_2localSaint()runSaint() - Add protein lengths from fasta file to data frame (id_col - protein id column.)
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transform_force() - force data transformation