Differential expression analysis from peptide input to protein output

Differential expression analysis from peptide input to protein output

Differential expression analysis from peptide input to protein output

Details

Runs facades that consume peptide-level measurements but emit protein-level contrasts. The input LFQData keeps peptide hierarchy columns, while its active hierarchy depth points to the protein level.

Super class

prolfquapp::DEAnalyse -> DEAnalysePeptideToProtein

Methods

Public methods

• DEAnalysePeptideToProtein$build_default()

• DEAnalysePeptideToProtein$clone()

Inherited methods

• prolfquapp::DEAnalyse$build_facade()
• prolfquapp::DEAnalyse$filter_contrasts()
• prolfquapp::DEAnalyse$get_annotated_contrasts()
• prolfquapp::DEAnalyse$initialize()

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Method build_default()

Build the default peptide-to-protein facade.

Usage

DEAnalysePeptideToProtein$build_default()

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Method clone()

The objects of this class are cloneable with this method.

Usage

DEAnalysePeptideToProtein$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.