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Convert AnnData back to LFQData + ProteinAnnotation

Source: R/anndata_to_lfqdata.R
LFQData_from_anndata.Rd

Reconstructs the list(lfqdata, protein_annotation) pair from an AnnData object that was created by preprocess_DIANN_anndata (or any producer that writes the prolfquapp uns namespace).

Usage

LFQData_from_anndata(adata)

Arguments

adata

an anndataR::AnnData object with uns$prolfquapp

Value

list with lfqdata (LFQData) and protein_annotation (ProteinAnnotation)

Examples

if (FALSE) { # \dontrun{
res <- sim_data_protAnnot()
adata <- preprocess_DIANN_anndata_from_lfq(res$lfqdata, res$pannot)
back <- LFQData_from_anndata(adata)
} # }