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Dataset protein annot

Source: R/R6_ProteinAnnotation.R
dataset_protein_annot.Rd

Extracts protein annotation from a data frame, renaming columns and auto-detecting UniProt identifiers. For new code prefer build_protein_annot which returns a ProteinAnnotation R6 object.

Usage

dataset_protein_annot(
  msdata,
  idcol = c(protein_Id = "Protein.Group"),
  protein_annot = "fasta.header",
  more_columns = c("nrPeptides", "fasta.id")
)

Arguments

msdata

data frame

idcol

named vector mapping protein ID column

protein_annot

fasta header column name

more_columns

more columns to include