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get BGS and fasta file location in folder

Source: R/preprocess_BGS_default.R, R/proprocess_BGS_default.R
get_BGS_files.Rd

get BGS and fasta file location in folder

get BGS and fasta file location in folder

Usage

get_BGS_files(
  path,
  bgs_pattern = "*BGS Factory Report \\(Normal\\).tsv|_Report.tsv"
)

get_BGS_files(
  path,
  bgs_pattern = "*BGS Factory Report \\(Normal\\).tsv|_Report.tsv"
)

Arguments

path

path to data directory

bgs_pattern

glob pattern for BGS report files

Value

list with paths to data and fasta

list with paths to data and fasta

Examples

if (FALSE) { # \dontrun{
x <- get_DIANN_files("inst/application/DIANN/2517219/")
} # }
if (FALSE) { # \dontrun{
x <- get_DIANN_files("inst/application/DIANN/2517219/")
} # }