preprocess_dummy

preprocess_dummy

Usage

preprocess_dummy(
  quant_data,
  fasta_file,
  annotation,
  pattern_contaminants = "^zz|^CON|Cont_",
  pattern_decoys = "^REV_|^rev"
)

Arguments

quant_data

path to quantification data file

fasta_file

path to fasta file(s)

annotation

annotation list from read_annotation

pattern_contaminants

regex pattern for contaminants

pattern_decoys

regex pattern for decoys