Run differential expression analysis for CompoundDiscoverer ZIP exports

Reads the embedded prolfqua sample annotation and long feature table from a CompoundDiscoverer ZIP export, then runs the same DEA preparation and model pipeline as run_dea.

Usage

run_dea_cd(input = NULL, config, files = NULL, subset_column = NULL)

Arguments

input

ZIP file path or directory containing one ZIP export

config

a ProlfquAppConfig object

files

optional file list from get_CD_export_files

subset_column

optional long-table subset column to filter features

Value

list with deanalyse, xd, annotation, and files