read combined_protein.tsv file for FragPipe Version 16 or newer — tidy_FragPipe_combined_protein • prolfquapp

read combined_protein.tsv file for FragPipe Version 16 or newer

Usage

tidy_FragPipe_combined_protein(
  combprot,
  as_list = FALSE,
  spcnames = c("Total Spectral Count", "Unique Spectral Count", "Razor Spectral Count"),
  intnames = c("Total Intensity", "Unique Intensity", "Razor Intensity"),
  maxlfqnames = c("MaxLFQ Total Intensity", "MaxLFQ Unique Intensity",
    "MaxLFQ Razor Intensity")
)

Arguments

combprot: path to combined_protein.tsv file
as_list: return as list

Value

tidy dataframe or list with df (e.g. total.spectral.count or total.intensity etc).

See also

Other FragPipe: FragPipe, tidy_FragPipe_MSstats_csv(), tidy_FragPipe_combined_protein_deprec()