parse MQ peptides.txt

parse MQ peptides.txt

parse MQ peptides.txt

Usage

tidyMQ_Peptides(MQPeptides, proteotypic_only = TRUE)

tidyMQ_Peptides(MQPeptides, proteotypic_only = TRUE)

Arguments

MQPeptides

data.frame generated with read.csv("peptide.txt",sep = "\t", stringsAsFactors = FALSE)

See also

Other MaxQuant: MaxQuant, tidyMQ_Evidence(), tidyMQ_ProteinGroups()

Other MaxQuant: MaxQuant, tidyMQ_Evidence(), tidyMQ_ProteinGroups()

Examples

peptide_txt <- prolfqua::find_package_file("prolfquapp", "samples/maxquant_txt/tiny2.zip")

peptides_txt <- read.csv(
  unz(peptide_txt, "peptides.txt"),
  header = TRUE, stringsAsFactors = FALSE, sep = "\t")
mq_peptides <- tidyMQ_Peptides(peptides_txt)



peptide_txt <- prolfqua::find_package_file(
  "prolfquapp", "samples/maxquant_txt/tiny2.zip")

peptides_txt <- read.csv(
  unz(peptide_txt, "peptides.txt"),
  header = TRUE, stringsAsFactors = FALSE, sep = "\t")
mq_peptides <- tidyMQ_Peptides(peptides_txt)