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extract intensities and annotations from MQ proteinGroups.txt

Source: R/preprocess_MaxQuant.R, R/tidyMS_MaxQuant.R
tidyMQ_ProteinGroups.Rd

extract intensities and annotations from MQ proteinGroups.txt

extract intensities and annotations from MQ proteinGroups.txt

Usage

tidyMQ_ProteinGroups(MQProteinGroups)

tidyMQ_ProteinGroups(MQProteinGroups)

Arguments

MQProteinGroups

data.frame generated with read.csv("peptide.txt",sep="\t", stringsAsFactors=FALSE)

See also

Other MaxQuant: MaxQuant, tidyMQ_Evidence(), tidyMQ_Peptides()

Other MaxQuant: MaxQuant, tidyMQ_Evidence(), tidyMQ_Peptides()

Examples

protein_txt <- prolfqua::find_package_file("prolfquapp","samples/maxquant_txt/tiny2.zip")
protein_txt <- read.csv(
  unz(protein_txt, "proteinGroups.txt"),
  header = TRUE, stringsAsFactors = FALSE, sep = "\t")
mq_proteins <-tidyMQ_ProteinGroups(protein_txt)

protein_txt <- prolfqua::find_package_file(
  "prolfquapp", "samples/maxquant_txt/tiny2.zip")
protein_txt <- read.csv(
  unz(protein_txt, "proteinGroups.txt"),
  header = TRUE, stringsAsFactors = FALSE, sep = "\t")
mq_proteins <-tidyMQ_ProteinGroups(protein_txt)