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prolfquabenchmark
0.3.3
Reference
Articles
DEA benchmark IonStar/FragPipeV14/MSstats.tsv
DEA benchmark IonStar/FragPipeV14/combined_protein.tsv
Benchmarking the msqrob2 package using the Ionstar Dataset starting from peptides.txt
Benchmarking MSstats DEA using the Ionstar Dataset/MaxQuant
Modelling with Interactions
Benchmarking SaintExpress
DEA benchmark CPTAC/MaxQuant/peptide.txt
Benchmarking the proDA package using the Ionstar Dataset MQ LFQ intensities
Benchmarking the proDA package using the Ionstar Dataset starting from peptides
Benchmarking robust linear model using the Ionstar Dataset
Benchmarking normalization, aggregation and models using the Ionstar Dataset
Reference
All functions
cptac_bench_preprocess()
preprocess cptac dataset for benchmarking
Contents