All functions

Benchmark

Benchmark R6 class

benchmark_from_file()

Create a Benchmark object from a contrast result directory

collect_benchmark_results()

Collect benchmark results from multiple files

cptac_bench_preprocess()

preprocess cptac dataset for benchmarking

ionstar_bench_preprocess()

prepare benchmark data

make_benchmark()

make Benchmark

ms_bench_ap()

Compute Average Precision (area under Precision-Recall curve)

plot_benchmark_comparison()

Plot comparison of benchmark results across methods

read_benchmark_results()

Read benchmark summary results from TSV

read_contrast_results()

Read contrast results from standardized file format

write_benchmark_results()

Write benchmark summary results to TSV

write_contrast_results()

Write contrast results to a standardized file format