lfqdata_from_anndata

Convert AnnData back to LFQData + ProteinAnnotation

Description

Reconstructs the list(lfqdata, protein_annotation) pair from an AnnData object that was created by preprocess_DIANN_anndata (or any producer that writes the prolfquapp uns namespace).

Usage

LFQData_from_anndata(adata)

Arguments

adata an anndataR::AnnData object with uns$prolfquapp

Value

list with lfqdata (LFQData) and protein_annotation (ProteinAnnotation)

Examples

library("prolfquapp")

res <- sim_data_protAnnot()
adata <- preprocess_DIANN_anndata_from_lfq(res$lfqdata, res$pannot)
back <- LFQData_from_anndata(adata)