Run differential expression analysis for CompoundDiscoverer ZIP exports
Description
Reads the embedded prolfqua sample annotation and long feature table from a CompoundDiscoverer ZIP export, then runs the same DEA preparation and model pipeline as run_dea.
Usage
run_dea_cd(input = NULL, config, files = NULL, subset_column = NULL)
Arguments
input
|
ZIP file path or directory containing one ZIP export |
config
|
a ProlfquAppConfig object
|
files
|
optional file list from get_CD_export_files
|
subset_column
|
optional long-table subset column to filter features |
Value
list with deanalyse, xd, annotation, and files