Dataset protein annot

Description

Extracts protein annotation from a data frame, renaming columns and auto-detecting UniProt identifiers. For new code prefer build_protein_annot which returns a ProteinAnnotation R6 object.

Usage

dataset_protein_annot(
  msdata,
  idcol = c(protein_Id = "Protein.Group"),
  protein_annot = "fasta.header",
  more_columns = c("nrPeptides", "fasta.id")
)

Arguments

msdata	data frame
idcol	named vector mapping protein ID column
protein_annot	fasta header column name
more_columns	more columns to include