aggregate_data – prolfquapp

dataset transform data

Description

dataset transform data

Usage

aggregate_data(lfqdata, agg_method = c("medpolish", "rlm", "topN"), N = 3)

Arguments

lfqdata LFQData object

agg_method aggregation method

N number of top peptides for topN aggregation

Examples

library("prolfquapp")


xx <- prolfqua::sim_lfq_data_peptide_config()
lfqdata <- prolfqua::LFQData$new(xx$data, xx$config)
aggregated <- aggregate_data(lfqdata, agg_method = "medpolish")
aggregated$response()

[1] "exp_medpolish"

aggregated <- aggregate_data(lfqdata, agg_method = "rlm")
aggregated$response()

[1] "exp_lmrob"

aggregated <- aggregate_data(lfqdata, agg_method = "topN")
aggregated$response()

[1] "srm_sum_3"