prolfquapp
  1. Reference
  2. write_index_html
  • Home
  • Articles
    • Differential Expression Analysis.
    • Differential Expression Analysis Quality Control
    • Differential Expression Analysis (Tabbed Report)
    • Protein Signal Intensities within Groups
    • Quality Control & Sample Size Estimation
    • Auxiliary - Bioinformatics Project Meeting Agenda
  • Reference
    • add_contrasts_vec
    • add_RevCon
    • aggregate_data
    • AnnotationProcessor
    • bfabric_url_builder
    • build_protein_annot
    • capture_output
    • column_to_rownames
    • compute_IBAQ_values
    • copy_docker_script
    • copy_shell_script
    • dataset_get_functions
    • dataset_protein_annot
    • dataset_template_BGS
    • dataset_template_diann
    • dataset_template_FP_TMT
    • dataset_template_MAXQUANT
    • dataset_template_MSSTATS
    • DEAnalyse
    • DEAnalysePeptideToProtein
    • DEAReportGenerator
    • diann_output_to_peptide
    • diann_read_output
    • example_deanalyse
    • example_qc_generator
    • exp2
    • ExternalReader
    • extract_contrasts
    • extract_GN
    • feature_annotation_collapse_to_single_row
    • feature_annotation_get_best_score
    • filter_by_peptide_count
    • FragPipe
    • get_annot_from_fasta
    • get_BGS_files
    • get_CD_export_files
    • get_CD_subset_columns
    • get_config
    • get_DIANN_files
    • get_dummy_files
    • get_FP_multiSite_files
    • get_FP_PSM_files
    • get_MQ_peptide_files
    • get_MSstats_files
    • get_mzMine_files
    • get_procfuncs
    • get_SIM_files
    • LFQData_from_anndata
    • list_to_R6_app_config
    • make_annotated_experiment
    • make_CD_duplicate_features_unique
    • make_DEA_config_R6
    • make_feature_annotation
    • massage_CD
    • MaxQuant
    • normalize_path
    • nr_tryptic_peptides
    • plot_abundance_vs_percent
    • plotly_ggplot_subplot
    • preprocess_anndata_from_lfq
    • preprocess_BGS
    • preprocess_CD_export
    • preprocess_CD
    • preprocess_DIANN_anndata
    • preprocess_DIANN
    • preprocess_dummy
    • preprocess_FP_PSM
    • preprocess_MQ_peptide
    • preprocess_MSstats_FPDIA
    • preprocess_MSstats
    • preprocess_mzMine
    • preprocess_SIM
    • preprocess_software
    • ProcessingOptions
    • ProjectSpec
    • ProjectStructure
    • prolfqua_preprocess_functions
    • ProlfquAppConfig
    • ProteinAnnotation
    • ProteinDataPrep
    • QC_generator
    • read_annotation
    • read_BF_yamlR6
    • read_BGS
    • read_msstats
    • read_table_data
    • route_messages_to_logger
    • run_contrasts_single
    • run_contrasts_twofactor
    • run_dea_cd
    • run_dea
    • run_make_yaml
    • run_qc_preprocess
    • sanitize_CD_subset_name
    • set_lib_path
    • set_list_to_R6
    • sim_data_protAnnot
    • strip_rownames
    • sync_opt_config
    • tidy_FragPipe_psm_V2
    • tidy_FragPipe_psm
    • tidy_mzMineFeatures
    • transform_lfqdata
    • validate_prolfquapp_anndata
    • write_annotation_file
    • write_index_html
    • writeLinesPaired
    • zipdir_name
  • News
  • License
  • Code of conduct
  • Citation
  1. Reference
  2. write_index_html

write index.html file with links to all relevant files:

Description

write index.html file with links to all relevant files:

Usage

write_index_html(file_path_list, result_dir)

Arguments

file_path_list named list of output file paths
result_dir directory for the index.html output

Examples

library("prolfquapp")

.resdir <- "."
write_index_html(prolfquapp:::.test_links,tempdir())
  • View source